Problem while creating environment from yaml file - iphop iphop Trouble Brewing with YAML Environment Creation Have you encountered a frustrating situation where your YAML file refuses to cooperate when you try to crea 2 min read 05-10-2024 11
How to connect genes with lines with ggplot2 in R Visualizing Genetic Relationships Connecting Genes with Lines in ggplot2 Understanding the intricate relationships between genes is crucial for unraveling the m 2 min read 04-10-2024 8
Calculate the direction of gggenes data in R Navigating the Genomic Landscape Calculating Directions in gggenes Plots Visualizing genomic data can be a complex task particularly when dealing with large dat 2 min read 04-10-2024 7
Create regex-like (run length encoding) of string s for blocks of a given length k Creating a Regex like Run Length Encoding for String Blocks of a Given Length When dealing with strings a common problem is compressing data for storage or tran 2 min read 27-09-2024 20
Dataframe Expansion: Generating Genomic Positions +/- 250 Nucleotides Dataframe Expansion Generating Genomic Positions 250 Nucleotides In the field of bioinformatics one common task is to expand genomic positions to include a spec 2 min read 25-09-2024 15
Snakemake how to move files created to a new directory of same name Moving Files in Snakemake to a New Directory of the Same Name Snakemake is an efficient workflow management system that is particularly useful for bioinformatic 2 min read 23-09-2024 16
fastq-dump.3.1.1 err: item not found while constructing within virtual database module - the path 'SRRXXXXX.sra' cannot be opened as database or table Understanding and Resolving the fastq dump 3 1 1 Error Item Not Found in Virtual Database Module When working with bioinformatics tools particularly in data ret 3 min read 22-09-2024 11
How to merge multiple dendrogram with a heatmap in R? How to Merge Multiple Dendrograms with a Heatmap in R Creating visualizations that effectively represent complex data is crucial in data analysis One common cha 2 min read 21-09-2024 20
Is there a way I can use snakemake to generate files based on sequence in a list? Using Snakemake to Generate Files Based on a Sequence List Snakemake is a powerful workflow management system that allows users to define complex data pipelines 2 min read 20-09-2024 20
R Data Manipulation Help: For each value in column B, look in column A for the "best match" and set value to that value R Data Manipulation Help Finding the Best Match Between Two Columns In data analysis it s often necessary to compare values between columns and find the most ap 2 min read 17-09-2024 21
Ignoring Sample Information when Making VCF with Freebayes Ignoring Sample Information A Potential Pitfall in VCF Generation with Freebayes Freebayes is a powerful tool for variant calling particularly in the realm of p 2 min read 13-09-2024 21
config file taking it as literal string snakemake Snakemake The Case of Literal String Configuration Files Sometimes you might want to use a Snakemake configuration file that contains strings exactly as they ar 2 min read 13-09-2024 15
Reverse complement of DNA strand using Python Reverse Complementing DNA Sequences in Python Handling Non Standard Bases Finding the reverse complement of a DNA sequence is a fundamental task in bioinformati 3 min read 06-09-2024 20
Is there any way to convert Morgan fingerprint into a way I can figure out what molecule it is? Deciphering the Molecular Code Can You Reverse Engineer a Morgan Fingerprint You ve got a Morgan fingerprint a unique digital identifier for a molecule and you less than a minute read 04-09-2024 21
Problem while creating environment from yaml file - iphop Solving Encountered problems while solving Errors During Environment Creation When creating a conda environment from a YAML file you might encounter errors like 2 min read 04-09-2024 28
Loading R libraries in Jupyter notebook using Rpy2 and R Magic results in error Troubleshooting R Library Loading in Jupyter Notebook with rpy2 and R Magic Integrating R into Python environments specifically Jupyter Notebooks can be a power 3 min read 01-09-2024 25
Is there a way to make two scatter density plots share the same legend in R Combining Scatter Density Plots with a Shared Legend in R Visualizing data distributions with scatter density plots can be incredibly insightful especially when 2 min read 01-09-2024 17
How to select files in subdirectories by name and move all files containing "XXX" and "YYY" into new directories Moving Files by Name in Subdirectories A Comprehensive Guide Scenario You have multiple subdirectories containing files with specific names like ATAC and RNA an 2 min read 31-08-2024 21
How can I import cytoscape library and use it in javascript file written in in Visual Studio Code Importing and Using Cytoscape in Java Script with Visual Studio Code Visualizing complex data relationships like protein protein interactions can be greatly enh 2 min read 30-08-2024 24
TaskRun failed to finish due to an error for Coretex BioInformatics workflow Troubleshooting Task Run Failed to Finish Errors in Coretex Bioinformatics Workflows Coretex is a powerful platform for managing bioinformatics workflows but en 2 min read 30-08-2024 23
How to enable "output" to detect variables in "run" in snakemake Dynamically Creating Directories in Snakemake using expand and output This article explores a common issue in Snakemake dynamically generating output directorie 2 min read 30-08-2024 33
Failed to load expression data from Geodataset in R Decoding Gene Expression Data from GEO Datasets A Practical Guide Are you facing the challenge of extracting expression data from a GEO dataset in R only to fin 2 min read 30-08-2024 22
Multiple variables in input and output using wildcards snakemake Handling Multiple Variables with Wildcards in Snakemake A Deep Dive This article tackles a common challenge in Snakemake workflows managing multiple variables w 3 min read 30-08-2024 32
What is the easiest way in Biopython to duplicate or "clone" a chain in a PDB file? Duplicating Chains in PDB Files with Biopython A Simplified Approach Working with protein structures often involves manipulating and replicating chains within P 2 min read 28-08-2024 24
Error in connection querying MotifDb in R Troubleshooting Connection Errors with Motif Db in R This article will guide you through troubleshooting connection errors encountered while using the Motif Db 2 min read 27-08-2024 12